Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs145135139 chr13:111953317 C/T 7.14E-5 108 16.3 7.17 NA KM Plot
LAML rs1451883 chr8:1107048 A/T 0.000173 109 0 13.1 16.17 KM Plot
LAML rs145821660 chr11:93193051 G/A 4.81E-5 109 16.77 11.67 6.13 KM Plot
LAML rs146058760 chr7:105155054 A/AAAAAG 0.000125 110 15.7 13.1 0 KM Plot
LAML rs147015783 chr13:71346047 GGTGT/G 1.89E-5 110 0 5 16.27 KM Plot
LAML rs147679017 chr17:30420786 A/G 4.34E-5 111 14.67 15.23 0.52 KM Plot
LAML rs147766240 chr19:33957675 AGAAAT/A 1.74E-5 107 16.23 12.72 3 KM Plot
LAML rs148002544 chr10:134970336 TAC/T 6.99E-5 108 16.3 15.73 3 KM Plot
LAML rs148421531 chr6:134306312 G/T 0.000172 109 16.17 10.13 1 KM Plot
LAML rs148759445 chr11:34295454 C/G 0.000118 111 13.2 16.3 0 KM Plot
LAML rs148948402 chr19:12542852 T/C 1.87E-5 111 6.13 22.37 13.1 KM Plot
LAML rs148982765 chr17:30524475 G/A 3.9E-5 109 14.67 15.17 0.52 KM Plot
LAML rs149300088 chr17:30404581 T/A 4.46E-5 105 16.23 15.23 0 KM Plot
LAML rs149636688 chr2:62573969 A/AATTT 7.94E-5 108 16.17 10.63 0 KM Plot
LAML rs150081359 chr17:30400699 C/T 4.46E-5 105 16.23 15.23 0 KM Plot